Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906045.1_cds_XP_016456296.1_50144
CDS Infomation

[gene=LOC107780277] [db_xref=GeneID:107780277] [protein=pentatricopeptide repeat-containing protein At1g31430-like] [protein_id=XP_016456296.1] [location=292..2166] [gbkey=CDS]
Sequence

ATGTGTTCAATAAAGTTAATTTCTAGTCGTTCCATTAATAAACTTTCTAGCCTCTCAACT
CTCATCTATTGTTCACCAAAAGAAACACTTGAGCCTAAAACATGCATTGAGCTTCTAAAG
ACATGCAAATCCATTACAAAACTCAAACAAATCCATGCCCAAGTCATCATCCTCAATTTC
CACAAACACATTGGCATTTTACACAAGCTTTTAGCTTTTACAACCGATACATTCCAAGGA
GGAGACTTTAATTACGCCAAGAAAATCTTTAGTTGTTGTGAGAATCGAACATTGTTCATT
TACAATGTAATGATTAAAGGATACGTGAAAAAGGGCCAATTTAAAGAACCCCTTTTCTTG
TTTGATGAATTGAGAATAGGTGGCTTGTCTCCTGATAATTTCACGTACCCATTTGTGTTT
AAAGCTGTTGGGGAGTTGAAAATGGTGAAGGGAGGTGAAAAGCTTCATGGGTATGTGTTG
AAATCTGGTGTTTGGTTTGATAACTATGTTGGTAATTCTGTTATGGATATGTATGGTCTG
TTTGGTTGTGTGACGAGTTTGAACAAAGTGTTTGATGAAATGCCTCACAGAGATTCGGTC
GCATGGAATATATTGATTGCTGGATTTGTGAGATGTGATAGGTATCAGGATGCTGTTGGG
GCTTACATGAAGATGCGGGAGGAAAGTGGTGTTAAGCCTGACGAAGCGACAGTTGTGAGT
ACTTTGTCAGCTTGCACTGCGTTGAAAAGCTTGGAACTTGGTAAAGAAATTCATCGATAC
GTTGTTGAAGAGCTTGGGTTTAGCGTTATTATTGGGAATACATTAGTGGACATGTATTCT
AAGTGTGGATTCTTGATGGTGGCTAGGCAGATTTTTGATGATATGCCGACGAAAAATGTT
ATATGTTGGACTAGTATGGTTTCTGGGTATGTTAATCGCGGTCAATTGGATGAAGCTAGA
AAACTTTTTGAGAGGAGTCCGGTAAGGGATCTAGTTCTGTGGACAACTATGATTAATGGG
TATGTGCAATTCAACCGTGTTGATGATGCAATGGATTTGTTTCGTTCGATGCAAATGCAA
AGAATTAAACCTGATAAATACACATTGGTTGCCCTTCTCACTGGTTGTGCTCAGATAGGA
GCCTTGGAACAAGGGGAATGGATTCGTGATTACATGAAAGAAAACAAAATAGCCATTACT
GCAGTTGTTGGTACGGCCCTTATAGAGATGTATGCAAAGTGTGGTTGCATAGAAAAATCG
ATGGAAATATTTGATGGATTAAAAGAGAAAGATACTGCATCATGGACTTCAATTATTTGT
GCGTTAGCCATGAGCGGTAACACGAGGAAAGCACTAGAACTGTTCTCACAAATGGAACAA
GCTGGATTTTGCCCCGATGATATCACTTTTATCGGAGTGTTGAGTGCATGCAGCCATGGG
GGCTTGGTAGAGGAAGGCCGCAGGTATTTCCACTCAATGAGTAGGATTTATGGGATTCAG
CCAAAGTTAGAACATTATGGTTGTCTGATTGACCTACTTGGTCGTGCTGGGCTCTTAAGA
GAAGCTGAAGAAATGATATCTATGATACCAAAAAAAGACAATGAGATTATAATTCCAATA
TATGGGGCTTTGCTCAGTGCCTGCAGAATTTACGGCAGTATTGATGTCGGTGAACGTGTG
GCTAAACTGCTTATGGAGATTGAGTCGTATGATTCTAGCACTCATACGCTTCTGGCAAAC
ACCTATGCATCTGCTGGCAGATGGGAAGATGTATCAAAGGTCAGAGGAACTATGCGAGAT
TTAGGTGTTAAGAAGTCACCTGGGTGCAGTTCAGTTGACGTCAATGCCAATGTGTATGAG
TTCGTTGGGCATTAA

Peptide Sequence

PEP ID

XP_016456296.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g31430-like [Nicotiana tabacum]
Sequence

MCSIKLISSRSINKLSSLSTLIYCSPKETLEPKTCIELLKTCKSITKLKQIHAQVIILNF
HKHIGILHKLLAFTTDTFQGGDFNYAKKIFSCCENRTLFIYNVMIKGYVKKGQFKEPLFL
FDELRIGGLSPDNFTYPFVFKAVGELKMVKGGEKLHGYVLKSGVWFDNYVGNSVMDMYGL
FGCVTSLNKVFDEMPHRDSVAWNILIAGFVRCDRYQDAVGAYMKMREESGVKPDEATVVS
TLSACTALKSLELGKEIHRYVVEELGFSVIIGNTLVDMYSKCGFLMVARQIFDDMPTKNV
ICWTSMVSGYVNRGQLDEARKLFERSPVRDLVLWTTMINGYVQFNRVDDAMDLFRSMQMQ
RIKPDKYTLVALLTGCAQIGALEQGEWIRDYMKENKIAITAVVGTALIEMYAKCGCIEKS
MEIFDGLKEKDTASWTSIICALAMSGNTRKALELFSQMEQAGFCPDDITFIGVLSACSHG
GLVEEGRRYFHSMSRIYGIQPKLEHYGCLIDLLGRAGLLREAEEMISMIPKKDNEIIIPI
YGALLSACRIYGSIDVGERVAKLLMEIESYDSSTHTLLANTYASAGRWEDVSKVRGTMRD
LGVKKSPGCSSVDVNANVYEFVGH

Transcript Sequence

Gene sequence data has not been registered.